Package index
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checkScans() - Check if any samples are missing spectra
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createRanges() - Create m/z and retention time ranges for target compounds
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createTargetList() - Create target list
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extract_eic() - Function to extract EIC from Spectra object
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filterSingle() - filter Spectra to single peak in single sample
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find_peak_points() - Simple peak detection algorithm on chromatographic data
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find_peak_points_orig() - Find peak points
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integrateSinglePeak() - Integrate single chromatographic peak in single file
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plotDiagnostic() - Diagnostic plots
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plotQCs() - Function to make plots of QC samples
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plotSamples() - Function to make plots of samples
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qscoreCalculator() - qcoreCalculator
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renameRawFiles() - Rename Thermo .raw files Script to read XCalibur sequence list and rename files according to run type (sample, QC, blank, etc...)
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runTardis() - Run T.A.R.D.I.S.
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tardisPeaks() - TARDIS Peak Detection